It seems to be coming predominantly from the hot end / extruder assembly. I have seen that various folks have resonance issues on this printer, so I’ll see if I can track down any more of those fixes. I did try the side panels off, loosen one of the screws, move the head around, retighten the screw thing, but that doesn’t seem to have made any difference. So I guess the gantry is square but something is causing resonance in the print head.
I can’t believe it would be the extruder, but I am a little curious about it since it also seems to have some odd extrusion effects (essentially like what I’d imagine it would look like when you “skip” over a surface by dragging something along; little splots, then thin, then little splots, but almost imperceptible due to the very high frequency of the micro stutters — first layers look almost flawless too so not really sure what the deal is).
For what it’s worth when I purchased an extruder upgrade I had to get a new motor. The motor on my Ender 3 pro had a press fit gear on the motor arm and it was too short to fit the dual gear extruder (I did manage to get the press fit off only to realize the arm was too short).
If you’re able to order from Amazon, or a similar store with a decent return or exchange policy, I’d just get what you think you will need and return or exchange as necessary.